Riva, A, Kuzyk, O, Forsberg, E, Siuzdak, G, Pfann, C, Herbold, C, Daims, H, Loy, A, Warth, B & Berry, D 2019, 'A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome', Nature Communications, Jg. 10, 4366. https://doi.org/10.1038/s41467-019-12413-0

Lukumbuzya, M, Schmid, M, Pjevac, P & Daims, H 2019, 'A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms', Frontiers in Microbiology, Jg. 10, 1383. https://doi.org/10.3389/fmicb.2019.01383

Lee, KS, Palatinszky, M, Cardoso Pereira, MDF, Nguyen, J, Fernandez, V, Mueller, AJ, Menolascina, F, Daims, H, Berry, D, Wagner, M & Stocker, R 2019, 'An automated Raman-based platform for the sorting of live cells by functional properties', Nature Microbiology, Jg. 4, Nr. 6, S. 1035-1048. https://doi.org/10.1038/s41564-019-0394-9

Kits, K, Jung, M-Y, Vierheilig, J, Pjevac, P, Sedlacek, CJ, Liu, S, Herbold, C, Stein, LY, Richter, A, Wissel, H, Brueggemann, N, Wagner, M & Daims, H 2019, 'Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata', Nature Communications, Jg. 10, 1836. https://doi.org/10.1038/s41467-019-09790-x

Sakoula, D, Nowka, B, Spieck, E, Daims, H & Lücker, S 2018, 'The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge', Standards in Genomic Sciences, Jg. 13, S. 32. https://doi.org/10.1186/s40793-018-0338-7

Kitzinger, K, Koch, H, Lücker, S, Sedlacek, CJ, Herbold, C, Schwarz, J, Daebeler, A, Mueller, AJ, Lukumbuzya, M, Romano, S, Leisch, N, Karst, SM, Kirkegaard, R, Albertsen, M, Nielsen, PH, Wagner, M & Daims, H 2018, 'Characterization of the First “Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria', mBio, Jg. 9, Nr. 4, 01186-18. https://doi.org/10.1128/mBio.01186-18

Daims, H & Wagner, M 2018, 'Nitrospira', Trends in Microbiology, Jg. 26, Nr. 5, S. 462-463. https://doi.org/10.1016/j.tim.2018.02.001

Daebeler, A, Herbold, CW, Vierheilig, J, Sedlacek, CJ, Pjevac, P, Albertsen, M, Kirkegaard, RH, de la Torre, JR, Daims, H & Wagner, M 2018, 'Cultivation and Genomic Analysis of " Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland', Frontiers in Microbiology, Jg. 9, 193. https://doi.org/10.3389/fmicb.2018.00193

Hausmann, B, Pjevac, P, Schreck, K, Herbold, C, Daims, H, Wagner, M & Loy, A 2018, 'Draft genome sequence of Telmatospirillum siberiense 26-4b1T, an acidotolerant peatland alphaproteobacterium potentially involved in sulfur cycling', Genome Announcements, Jg. 6, Nr. 4, 01524-17. https://doi.org/10.1128/genomeA.01524-17

Kits, KD, Sedlacek, CJ, Lebedeva, EV, Han, P, Bulaev, A, Pjevac, P, Daebeler, A, Romano, S, Albertsen, M, Stein, LY, Daims, H & Wagner, M 2017, 'Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle', Nature, Jg. 549, Nr. 7671, S. 269-272. https://doi.org/10.1038/nature23679

Oswald, K, Graf, JS, Littmann, S, Tienken, D, Brand, A, Wehrli, B, Albertsen, M, Daims, H, Wagner, M, Kuypers, MM, Schubert, CJ & Milucka, J 2017, 'Crenothrix are major methane consumers in stratified lakes', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 11, Nr. 9, S. 2124-2140. https://doi.org/10.1038/ismej.2017.77

Pjevac, P, Schauberger, C, Poghosyan, L, Herbold, CW, van Kessel, MAHJ, Daebeler, A, Steinberger, M, Jetten, MSM, Lücker, S, Wagner, M & Daims, H 2017, 'AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment', Frontiers in Microbiology, Jg. 8, 1508. https://doi.org/10.3389/fmicb.2017.01508

Schulz, F, Yutin, N, Ivanova, NN, Ortega, DR, Lee, TK, Vierheilig, J, Daims, H, Horn, M, Wagner, M, Jensen, GJ, Kyrpides, NC, Koonin, EV & Woyke, T 2017, 'Giant viruses with an expanded complement of translation system components', Science, Jg. 356, Nr. 6333, S. 82-85. https://doi.org/10.1126/science.aal4657

Daims, H, Lücker, S & Wagner, M 2016, 'A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria', Trends in Microbiology, Jg. 24, S. 699-712. https://doi.org/10.1016/j.tim.2016.05.004

Hemp, J, Lücker, S, Schott, J, Pace, LA, Johnson, JE, Schink, B, Daims, H & Fischer, WW 2016, 'Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 10, S. 2669-2678. https://doi.org/10.1038/ismej.2016.56

Hupeden, J, Wegen, S, Off, S, Luecker, S, Bedarf, Y, Daims, H, Kuehn, C & Spieck, E 2016, 'Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH', Applied and Environmental Microbiology, Jg. 82, Nr. 6, S. 1838-1845. https://doi.org/10.1128/AEM.03163-15

Daims, H, Lebedeva, EV, Pjevac, P, Han, P, Herbold, C, Albertsen, M, Jehmlich, N, Palatinszky, M, Vierheilig, J, Bulaev, A, Kirkegaard, RH, Bergen, MV, Rattei, T, Bendinger, B, Nielsen, PH & Wagner, M 2015, 'Complete nitrification by Nitrospira bacteria', Nature, Jg. 528, Nr. 7583, S. 504–509. https://doi.org/10.1038/nature16461

Koch, H, Lücker, S, Albertsen, M, Kitzinger, K, Herbold, C, Spieck, E, Nielsen, PH, Wagner, M & Daims, H 2015, 'Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira', Proceedings of the National Academy of Sciences of the United States of America (PNAS), Jg. 112, Nr. 36, S. 11371-11376. https://doi.org/10.1073/pnas.1506533112

Palatinszky, M, Herbold, C, Jehmlich, N, Pogoda, M, Han, P, von Bergen, M, Lagkouvardos, I, Karst, SM, Galushko, A, Koch, H, Berry, D, Daims, H & Wagner, M 2015, 'Cyanate as an energy source for nitrifiers', Nature, Jg. 524, Nr. 7563, S. 105–108. https://doi.org/10.1038/nature14856

Schaffner, I, Hofbauer, S, Krutzler, M, Pirker, KF, Bellei, M, Stadlmayr, G, Mlynek, G, Djinovic-Carugo, K, Battistuzzi, G, Furtmueller, PG, Daims, H & Obinger, C 2015, 'Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp PCC7425', Molecular Microbiology, Jg. 96, Nr. 5, S. 1053-1068. https://doi.org/10.1111/mmi.12989

Hofbauer, S, Hagmüller, A, Schaffner, I, Mlynek, G, Krutzler, M, Stadlmayr, G, Pirker, KF, Obinger, C, Daims, H, Djinovic-Carugo, K & Furtmueller, PG 2015, 'Structure and heme-binding properties of HemQ (chlorite dismutase-like protein) from Listeria monocytogenes', Archives of Biochemistry and Biophysics, Jg. 574, S. 36-48. https://doi.org/10.1016/j.abb.2015.01.010

Gruber-Dorninger, C, Pester, M, Kitzinger, K, Savio, DF, Loy, A, Rattei, T, Wagner, M & Daims, H 2015, 'Functionally relevant diversity of closely related Nitrospira in activated sludge', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 9, S. 643-655. https://doi.org/10.1038/ismej.2014.156

Nowka, B, Off, S, Daims, H & Spieck, E 2015, 'Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages', FEMS microbiology ecology, Jg. 91, Nr. 3. https://doi.org/10.1093/femsec/fiu031

Luecker, S, Schwarz, J, Gruber-Dorninger, C, Spieck, E, Wagner, M & Daims, H 2015, 'Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 9, Nr. 3, S. 708-720. https://doi.org/10.1038/ismej.2014.158

Nowka, B, Daims, H & Spieck, E 2015, 'Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation', Applied and Environmental Microbiology, Jg. 81, Nr. 2, S. 745-753. https://doi.org/10.1128/AEM.02734-14

Pester, M, Maixner, F, Berry, D, Rattei, T, Koch, H, Lücker, S, Nowka, B, Richter, A, Spieck, E, Lebedeva, E, Loy, A, Wagner, M & Daims, H 2014, 'NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira', Environmental Microbiology, Jg. 16, Nr. 10, S. 3055-3071. https://doi.org/10.1111/1462-2920.12300

Koch, H, Galushko, A, Albertsen, M, Schintlmeister, A, Gruber-Dorninger, C, Lücker, S, Pelletier, E, Le Paslier, D, Spieck, E, Richter, A, Nielsen, PH, Wagner, M & Daims, H 2014, 'Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation', Science, Jg. 345, Nr. 6200, S. 1052-1054. https://doi.org/10.1126/science.1256985

Remus-Emsermann, MNP, Lücker, S, Mueller, DB, Potthoff, E, Daims, H & Vorholt, JA 2014, 'Spatial distribution analyses of natural phyllosphere-colonizing bacteria on Arabidopsis thaliana revealed by fluorescence in situ hybridization', Environmental Microbiology, Jg. 16, Nr. 7, S. 2329-2340. https://doi.org/10.1111/1462-2920.12482

Sorokin, DY, Vejmelkova, D, Lücker, S, Streshinskaya, GM, Rijpstra, WIC, Damste, JSS, Kleerbezem, R, van Loosdrecht, M, Muyzer, G & Daims, H 2014, 'Nitrolancea hollandica gen. nov., sp nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi', International Journal of Systematic and Evolutionary Microbiology, Jg. 64, S. 1859-1865. https://doi.org/10.1099/ijs.0.062232-0

Hofbauer, S, Gruber, C, Pirker, KF, Schaffner, I, Furtmueller, PG, Obinger, C, Hagmüller, A, Gysel, K, Mlynek, G, Kostan, J, Djinovic-Carugo, K, Bellei, M, Battistuzzi, G & Daims, H 2014, 'Understanding Chlorite Dismutase from Candidatus Nitrospira defluvii', Journal of Biological Inorganic Chemistry, Jg. 19, S. 253-253.

Almstrand, R, Persson, F, Daims, H, Ekenberg, M, Christensson, M, Wilen, B-M, Sorensson, F & Hermansson, M 2014, 'Three-Dimensional Stratification of Bacterial Biofilm Populations in a Moving Bed Biofilm Reactor for Nitritation-Anammox', International Journal of Molecular Sciences, Jg. 15, Nr. 2, S. 2191-2206. https://doi.org/10.3390/ijms15022191

Hofbauer, S, Gysel, K, Bellei, M, Hagmüller, A, Schaffner, I, Mlynek, G, Kostan, J, Pirker, KF, Daims, H, Furtmueller, PG, Battistuzzi, G, Djinovic-Carugo, K & Obinger, C 2014, 'Manipulating Conserved Heme Cavity Residues of Chlorite Dismutase: Effect on Structure, Redox Chemistry, and Reactivity', Biochemistry, Jg. 53, Nr. 1, S. 77-89. https://doi.org/10.1021/bi401042z

Lopez-Vazquez, CM, Kubare, M, Saroj, DP, Chikamba, C, Schwarz, J, Daims, H & Brdjanovic, D 2014, 'Thermophilic biological nitrogen removal in industrial wastewater treatment', Applied Microbiology and Biotechnology, Jg. 98, S. 945-956. https://doi.org/10.1007/s00253-013-4950-6

Almstrand, R, Daims, H, Persson, F, Sörensson, F & Hermansson, M 2013, 'New methods for analysis of spatial distribution and coaggregation of microbial populations in complex biofilms', Applied and Environmental Microbiology, Jg. 79, Nr. 19, S. 5978-5987. https://doi.org/10.1128/AEM.01727-13

Mußmann, M, Ribot, M, von Schiller, D, Merbt, SN, Augspurger, C, Karwautz, C, Winkel, M, Battin, TJ, Martí, E & Daims, H 2013, 'Colonization of freshwater biofilms by nitrifying bacteria from activated sludge', FEMS microbiology ecology, Jg. 85, Nr. 1, S. 104-115. https://doi.org/10.1111/1574-6941.12103

Kostanjšek, R, Pašić, L, Daims, H & Sket, B 2013, 'Structure and community composition of sprout-like bacterial aggregates in a Dinaric Karst subterranean stream', Microbial Ecology: an international journal, Jg. 66, Nr. 1, S. 5-18. https://doi.org/10.1007/s00248-012-0172-1

Dolinsek, J, Dorninger, C, Lagkouvardos, I, Wagner, M & Daims, H 2013, 'Depletion of Unwanted Nucleic Acid Templates by Selective Cleavage: LNAzymes, Catalytically Active Oligonucleotides Containing Locked Nucleic Acids, Open a New Window for Detecting Rare Microbial Community Members', Applied and Environmental Microbiology, Jg. 79, Nr. 5, S. 1534-1544. https://doi.org/10.1128/AEM.03392-12

Dolinsek, J, Lagkouvardos, I, Wanek, W, Wagner, M & Daims, H 2013, 'Interactions of Nitrifying Bacteria and Heterotrophs: Identification of a Micavibrio-Like Putative Predator of Nitrospira spp.', Applied and Environmental Microbiology, Jg. 79, Nr. 6, S. 2027-2037. https://doi.org/10.1128/AEM.03408-12

Lücker, S, Nowka, B, Rattei, T, Spieck, E & Daims, H 2013, 'The genome of Nitrospina gracilis illuminates the metabolism and evolution of the major marine nitrite oxidizer', Frontiers in Microbiology, Jg. 4, Nr. FEB, 17. https://doi.org/10.3389/fmicb.2013.00027

Lebedeva, EV, Hatzenpichler, R, Pelletier, E, Schuster, N, Hauzmayer, S, Bulaev, A, Grigor'eva, NV, Galushko, A, Schmid, M, Palatinszky, M, Le Paslier, D, Daims, H & Wagner, M 2013, 'Enrichment and Genome Sequence of the Group I.1a Ammonia-Oxidizing Archaeon "Ca. Nitrosotenuis uzonensis" Representing a Clade Globally Distributed in Thermal Habitats', PLoS ONE, Jg. 8, Nr. 11, S. e80835. https://doi.org/10.1371/journal.pone.0080835

Schillinger, C, Petrich, A, Lux, R, Riep, B, Kikhney, J, Friedmann, A, Wolinsky, LE, Göbel, UB, Daims, H & Moter, A 2012, 'Co-Localized or Randomly Distributed? Pair Cross Correlation of In Vivo Grown Subgingival Biofilm Bacteria Quantified by Digital Image Analysis', PLoS ONE, Jg. 7, Nr. 5. https://doi.org/10.1371/journal.pone.0037583

Hofbauer, S, Gysel, K, Mlynek, G, Kostan, J, Hagmüller, A, Daims, H, Furtmüller, PG, Djinovic-Carugo, K & Obinger, C 2012, 'Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases', Biochimica et Biophysica Acta - Proteins and Proteomics, Jg. 1824, Nr. 9, S. 1031-1038. https://doi.org/10.1016/j.bbapap.2012.05.012

Sorokin, DY, Lücker, S, Vejmelkova, D, Kostrikina, NA, Kleerebezem, R, Rijpstra, WIC, Damste, JSS, Le Paslier, DL, Muyzer, G, Wagner, M, Van Loosdrecht, M & Daims, H 2012, 'Nitrification expanded: discovery, physiology and genomics of a nitrite-oxidizing bacterium from the phylum Chloroflexi', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 6, Nr. 12, S. 2245-2256. https://doi.org/10.1038/ismej.2012.70

Ribot, M, Marti, E, von Schiller, D, Sabater, F, Daims, H & Battin, T 2012, 'Nitrogen processing and the role of epilithic biofilms downstream of a wastewater treatment plant', Freshwater Science, Jg. 31, Nr. 4, S. 1057-1069. https://doi.org/10.1899/11-161.1

Hofbauer, S, Bellei, M, Suendermann, A, Pirker, KF, Hagmüller, A, Mlynek, G, Kostan, J, Daims, H, Furtmüller, PG, Djinovic-Carugo, K, Oostenbrink, C, Battistuzzi, G & Obinger, C 2012, 'Redox Thermodynamics of High-Spin and Low-Spin Forms of Chlorite Dismutases with Diverse Subunit and Oligomeric Structures', Biochemistry, Jg. 51, Nr. 47, S. 9501-9512. https://doi.org/10.1021/bi3013033

Hall, EK, Singer, GA, Poelzl, M, Nunes Cornelio Hämmerle, I, Schwarz, C, Daims, H, Maixner, F & Battin, TJ 2011, 'Looking inside the box: using Raman microspectroscopy to deconstruct microbial biomass stoichiometry one cell at a time', The ISME Journal: multidisciplinary journal of microbial ecology, Jg. 5, Nr. 2, S. 196-208. https://doi.org/10.1038/ismej.2010.115

Lebedeva, E, Off, S, Zumbragel, S, Kruse, M, Shagzhina, A, Lücker, S, Maixner, F, Lipski, A, Daims, H & Spieck, E 2011, 'Isolation and characterization of a moderately thermophilic nitrite-oxidizing bacterium from a geothermal spring', FEMS microbiology ecology, Jg. 75, Nr. 2, S. 195-204. https://doi.org/10.1111/j.1574-6941.2010.01006.x

Hall, EK, Maixner, F, Franklin, O, Daims, H, Richter, A & Battin, T 2011, 'Linking Microbial and Ecosystem Ecology Using Ecological Stoichiometry: A Synthesis of Conceptual and Empirical Approaches', Ecosystems, Jg. 14, Nr. 2, S. 261-273. https://doi.org/10.1007/s10021-010-9408-4

Mußmann, M, Brito, I, Pitcher, A, Damste, JSS, Hatzenpichler, R, Richter, A, Nielsen, JL, Nielsen, PH, Daims, H, Wagner, M & Head, IM 2011, 'Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers', Proceedings of the National Academy of Sciences of the United States of America (PNAS), Jg. 108, Nr. 40, S. 16771-16776. https://doi.org/10.1073/pnas.1106427108

Mlynek, G, Sjöblom, B, Kostan, J, Füreder, S, Maixner, F, Gysel, K, Furtmüller, PG, Obinger, C, Wagner, M, Daims, H & Djinovic-Carugo, K 2011, 'Unexpected Diversity of Chlorite Dismutases: a Catalytically Efficient Dimeric Enzyme from Nitrobacter winogradsky', Journal of Bacteriology, Jg. 193, Nr. 10, S. 2408-2417. https://doi.org/10.1128/JB.01262-10

Lücker, S, Wagner, M, Maixner, F, Pelletier, E, Koch, H, Vacherie, B, Rattei, T, Damste, JSS, Spieck, E, Le Paslier, DL & Daims, H 2010, 'A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria', Proceedings of the National Academy of Sciences of the United States of America (PNAS), Jg. 107, Nr. 30, S. 13479-13484. https://doi.org/10.1073/pnas.1003860107

Stöcker, K, Dorninger, C, Daims, H & Wagner, M 2010, 'Double labeling of oligonucleotide probes for fluorescence in situ hybridization (DOPE-FISH) improves signal intensity and increases rRNA accessibility', Applied and Environmental Microbiology, Jg. 76, Nr. 3, S. 922-926. https://doi.org/10.1128/AEM.02456-09

Augspurger, C, Mußmann, M, Daims, H & Battin, T 2010, 'Drivers of bacterial colonization patterns in stream biofilms', FEMS microbiology ecology, Jg. 72, Nr. 1, S. 47-57. https://doi.org/10.1111/j.1574-6941.2009.00830.x

Kostan, J, Sjöblom, B, Maixner, F, Mlynek, G, Furtmüller, PG, Obinger, C, Wagner, M, Daims, H & Djinovic-Carugo, K 2010, 'Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii": Identification of a catalytically important amino acid residue.', Journal of Structural Biology, Jg. 172, Nr. 3, S. 331-342. https://doi.org/10.1016/j.jsb.2010.06.014

Daims, H 2009, 'Use of fluorescence in situ hybridization and the daime image analysis program for the cultivation-independent quantification of microorganisms in environmental and medical samples.', Cold Spring Harbor Protocols, Jg. 7.

Hatzenpichler, R, Lebedeva, EV, Spieck, E, Stöcker, K, Richter, A, Daims, H & Wagner, M 2008, 'A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring.', Proceedings of the National Academy of Sciences of the United States of America (PNAS), Jg. 105, Nr. 6, S. 2134-2139.

Maixner, F, Wagner, M, Lücker, S, Pelletier, E, Schmitz-Esser, S, Hace, K, Spieck, E, Konrat, R, Le Paslier, DL & Daims, H 2008, 'Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium "Candidatus Nitrospira defluvii".', Environmental Microbiology, Jg. 10, S. 3043-3056.

Biasi, C, Meyer, H, Rusalimova, O, Hämmerle, R, Kaiser, C, Baranyi, C, Daims, H, Lashchinsky, N, Barsukov, P & Richter, A 2008, 'Initial effects of experimental warming on carbon exchange rates, plant growth and microbial dynamics of a lichen-rich dwarf shrub tundra in Siberia', Plant and Soil: international journal on plant-soil relationships, Jg. 307, Nr. 1-2, S. 191-205. https://doi.org/10.1007/s11104-008-9596-2

Schwitalla, P, Mennerich, A, Austermann-Haun, U, Müller, A, Gruber-Dorninger, C, Daims, H, Holm, NC & Rönner-Holm, SG 2008, 'NH4+ ad-/desorption in sequencing batch reactors: simulation, laboratory and full-scale studies.', Water Science and Technology, Jg. 58, Nr. 2, S. 345-350. https://doi.org/10.2166/wst.2008.388

Reigstad, LJ, Richter, A, Daims, H, Urich, T, Schwark, L & Schleper, C 2008, 'Nitrification in terrestrial hot springs of Iceland and Kamchatka', FEMS microbiology ecology, Jg. 64, Nr. 2, S. 167-174.

Lebedeva, EV, Alawi, M, Jozsa, P-G, Daims, H & Spieck, E 2008, 'Physiological and phylogenetical characterization of a new lithoautotrophic nitrite-oxidizing bacterium 'Candidatus Nitrospira bockiana' sp. nov.', International Journal of Systematic and Evolutionary Microbiology, Jg. 58, S. 242-250. https://doi.org/10.1099/ijs.0.65379-0

Hoshino, T, Safak Yilmaz, L, Noguera, DR, Daims, H & Wagner, M 2008, 'Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.', Applied and Environmental Microbiology, Jg. 74, Nr. 16, S. 5068-5077. https://doi.org/10.1128/AEM.00208-08

Battin, T, Sloan, WT, Kjelleberg, S, Daims, H, Head, IM, Curtis, TP & Eberl, L 2007, 'Microbial landscapes: new paths to biofilm research', Nature Reviews. Microbiology, Jg. 5, Nr. 1, S. 76-81.

Daims, H & Wagner, M 2007, 'Quantification of uncultured microorganisms by fluorescence microscopy and digital image analysis', Applied Microbiology and Biotechnology, Jg. 75, S. 237-248.

Huang, WE, Stöcker, K, Griffiths, R, Newbold, L, Daims, H, Whiteley, AS & Wagner, M 2007, 'Raman-FISH: Combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function.', Environmental Microbiology, Jg. 9, S. 1878-1889.

Stöcker, K, Bendinger, B, Schöning, B, Nielsen, PH, Nielsen, JL, Baranyi, C, Tönshoff, E, Daims, H & Wagner, M 2006, 'Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase', Proceedings of the National Academy of Sciences of the United States of America (PNAS), Jg. 103, Nr. 7, S. 2363-2367. https://doi.org/10.1073/pnas.0506361103

Daims, H, Lücker, S & Wagner, M 2006, 'daime, a novel image analysis program for microbial ecology and biofilm research', Environmental Microbiology, Jg. 8, Nr. 2, S. 200-213. https://doi.org/10.1111/j.1462-2920.2005.00880.x

Strous, M, Pelletier, E, Mangenot, S, Rattei, T, Lehner, A, Taylor, MW, Horn, M, Daims, H, Bartol-Mavel, D, Wincker, P, Barbe, V, Fonknechten, N, Vallenet, D, Segurens, B, Schenowitz-Truong, C, Medigue, C, Horn, A, Snel, B, Dutilh, BE, Op Den Camp, HJM, Van Der Drift, CD, Cirpus, I, van de Pas-Schoonen, KT, Harhangi, HR, Van Niftrik, L, Schmid, MC, Keltjens, JTM, van de Vossenberg, J, Kartal, B, Meier, H, Frishman, DI, Huynen, MA, Mewes, HW, Weissenbach, JS, Jetten, MSM, Wagner, M & Le Paslier, DL 2006, 'Deciphering the evolution and metabolism of an anammox bacterium from a community genome', Nature, Jg. 440, Nr. 7085, S. 790-794. https://doi.org/10.1038/nature04647

Wagner, M, Nielsen, PH, Loy, A, Nielsen, JL & Daims, H 2006, 'Linking microbial community structure with function: Fluorescence in situ hybridization-microautoradiography and isotope arrays', Current Opinion in Biotechnology, Jg. 17, Nr. 1, S. 83-91.

Maixner, F, Noguera, DR, Anneser, B, Stöcker, K, Wegl, G, Wagner, M & Daims, H 2006, 'Nitrite concentration influences the population structure of Nitrospira-like bacteria', Environmental Microbiology, Jg. 8, Nr. 8, S. 1487-1495.

Spieck, E, Hartwig, C, McCormack, I, Maixner, F, Wagner, M, Lipski, A & Daims, H 2006, 'Selective enrichment and molecular characterization of a previously uncultured Nitrospira-like bacterium from activated sludge', Environmental Microbiology, Jg. 8, Nr. 3, S. 405-415.

Meyer, H, Kaiser, C, Biasi, C, Hämmerle, R, Rusalimova, O, Lashchinsky, N, Baranyi, C, Daims, H, Barsukov, P & Richter, A 2006, 'Soil carbon and nitrogen dynamics along a latitudinal transect in Western Siberia, Russia', Biogeochemistry: an international journal, Jg. 81, Nr. 2, S. 239-252. https://doi.org/10.1007/s10533-006-9039-1

Daims, H, Taylor, MW & Wagner, M 2006, 'Wastewater treatment: a model system for microbial ecology', Trends in Biotechnology, Jg. 24, Nr. 11, S. 483-489. https://doi.org/10.1016/j.tibtech.2006.09.002

Ginige, MP, Hugenholtz, P, Daims, H, Wagner, M, Keller, J & Blackall, LL 2004, 'Use of Stable-Isotope Probing, Full-Cycle rRNA Analysis, and Fluorescence In Situ Hybridization-Microautoradiography to Study a Methanol-Fed Denitrifying Microbial Community', Applied and Environmental Microbiology, Jg. 70, Nr. 1, S. 588-596. https://doi.org/10.1128/AEM.70.1.588-596.2004

Wagner, M, Horn, M & Daims, H 2003, 'Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes', Current Opinion in Microbiology, Jg. 6, Nr. 3, S. 302-309.

Daims, H, Schleifer, K-H & Wagner, M 2002, 'Halbautomatische und kultivierungs-unabhängige Quantifizierung von Bakterien in komplexen Umweltproben', Laborwelt, Nr. 1, S. 10-14.

Wagner, M, Loy, A, Nogueira, R, Purkhold, U & Daims, H 2002, 'Microbial community composition and function in wastewater treatment plants', Antonie van Leeuwenhoek: international journal of general and molecular microbiology, Jg. 81, S. 665-680.

Daims, H, Ramsing, NB, Schleifer, K-H & Wagner, M 2001, 'Cultivation-Independent, Semiautomatic Determination of Absolute Bacterial Cell Numbers in Environmental Samples by Fluorescence in Situ Hybridization', Applied and Environmental Microbiology, Jg. 67, Nr. 12, S. 5810-5818. https://doi.org/10.1128/AEM.67.12.5810-5818.2001

Daims, H, Nielsen, JL, Nielsen, PH, Schleifer, K-H & Wagner, M 2001, 'In Situ Characterization of Nitrospira-Like Nitrite-Oxidizing Bacteria Active in Wastewater Treatment Plants', Applied and Environmental Microbiology, Jg. 67, Nr. 11, S. 5273-5284.

Daims, H, Brühl, A, Amann, R, Schleifer, K-H & Wagner, M 1999, 'The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set', Systematic and Applied Microbiology, Jg. 22, S. 434-444.