Kop, L. F. M., Koch, H., Jetten, M. S. M., Daims, H., & Lücker, S. (2024). Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses. ISME Communications, 4(1), [ycad017]. https://doi.org/10.1093/ismeco/ycad017

Mueller, A. J., Daebeler, A., Herbold, C. W., Kirkegaard, R. H., & Daims, H. (2023). Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the Nitrospirales. The ISME Journal, 17(11), 2123-2133. https://doi.org/10.1038/s41396-023-01518-6

Ni, G., Leung, P. M., Daebeler, A., Guo, J., Hu, S., Cook, P., Nicol, G. W., Daims, H., & Greening, C. (2023). Nitrification in acidic and alkaline environments. Essays in biochemistry, 67(4), 753-768. https://doi.org/10.1042/EBC20220194

Zhang, Y., Liu, T., Li, M-M., Hua, Z-S., Evans, P., Qu, Y., Tan, S., Zheng, M., Lu, H., Jiao, J-Y., Lücker, S., Daims, H., Li, W-J., & Guo, J. (2023). Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira. The ISME Journal, 17(7), 993-1003. https://doi.org/10.1038/s41396-023-01409-w

Daebeler, A., Güell-Bujons, Q., Mooshammer, M., Zechmeister, T., Herbold, C. W., Richter, A., Wagner, M., & Daims, H. (2023). Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes. Environmental Microbiology, 25(5), 1055-1067. https://doi.org/10.1111/1462-2920.16337

Kop, L. F. M., Koch, H., Spieck, E., van Alen, T., Cremers, G., Daims, H., & Lücker, S. (2023). Complete Genome Sequence of Nitrospina watsonii 347, Isolated from the Black Sea. Microbiology resource announcements, 12(4), [e0007823]. https://doi.org/10.1128/mra.00078-23

De La Fuente, M. J., De la Iglesia, P., Farias, L., Glasner, B., Torres-Rojas, F., Muñoz, D., Daims, H., Lukumbuzya, M., & Vargas, I. T. (2022). Enhanced nitrogen and carbon removal in natural seawater by electrochemical enrichment in a bioelectrochemical reactor. Journal of Environmental Management, 323, [116294]. https://doi.org/10.1016/j.jenvman.2022.116294

Brugiroux, S., Berry, D., Ring, D., Barnich, N., Daims, H., & Stecher, B. (2022). Specific Localization and Quantification of the Oligo-Mouse-Microbiota (OMM12 ) by Fluorescence In Situ Hybridization (FISH). Current protocols, 2(9), [e548]. https://doi.org/10.1002/cpz1.548

Leung, P. M., Daebeler, A., Chiri, E., Hanchapola, I., Gillett, D. L., Schittenhelm, R. B., Daims, H., & Greening, C. (2022). A nitrite-oxidising bacterium constitutively consumes atmospheric hydrogen. The ISME Journal, 16(9), 2213-2219. https://doi.org/10.1038/s41396-022-01265-0

Jung, M-Y., Sedlacek, C. J., Kits, K. D., Mueller, A. J., Rhee, S-K., Hink, L., Nicol, G. W., Bayer, B., Lehtovirta-Morley, L., Wright, C., de la Torre, J. R., Herbold, C. W., Pjevac, P., Daims, H., & Wagner, M. (2022). Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities. ISME Journal, 16(1), 272-283. https://doi.org/10.1038/s41396-021-01064-z

Liu, S., Jung, M-Y., Zhang, S., Wagner, M., Daims, H., & Wanek, W. (2021). Nitrogen Kinetic Isotope Effects of Nitrification by the Complete Ammonia Oxidizer Nitrospira inopinata. mSphere, 6(6), [e0063421]. https://doi.org/10.1128/mSphere.00634-21

Gottshall, E. Y., Bryson, S. J., Cogert, K. I., Landreau, M., Sedlacek, C. J., Stahl, D. A., Daims, H., & Winkler, M. (2021). Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria. Water Research, 202, [117426]. https://doi.org/10.1016/j.watres.2021.117426

De la Fuente, M. J., De la Iglesia, R., Farias, L., Daims, H., Lukumbuzya, M., & Vargas, I. T. (2021). Electrochemical enrichment of marine denitrifying bacteria to enhance nitrate metabolization in seawater. Journal of Environmental Chemical Engineering, 9(4), [105604]. https://doi.org/10.1016/j.jece.2021.105604

Mueller, A. J., Jung, M-Y., Strachan, C., Herbold, C., Kirkegaard, R. H., Wagner, M., & Daims, H. (2021). Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting. ISME Journal, 15(3), 732-745. https://doi.org/10.1038/s41396-020-00809-6

Daebeler, A., Kitzinger, K., Koch, H., Herbold, C., Steinfeder, M., Schwarz, J., Zechmeister, T., Karst, S. M., Albertsen, M., Nielsen, P. H., Wagner, M., & Daims, H. (2020). Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira. ISME Journal, 14(12), 2967-2979. https://doi.org/10.1038/s41396-020-0724-1

Lukumbuzya, M., Kristensen, J. M., Kitzinger, K., Pommerening-Röser, A., Nielsen, P. H., Wagner, M., Daims, H., & Pjevac, P. (2020). A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria. Water Research, 186, [116372]. https://doi.org/10.1016/j.watres.2020.116372

Yang, Y., Daims, H., Liu, Y., Herbold, C. W., Pjevac, P., Lin, J-G., Li, M., & Gu, J-D. (2020). Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems. mBio, 11(2), [e03175-19]. https://doi.org/10.1128/mBio.03175-19

Kitzinger, K., Marchant, H. K., Bristow, L. A., Herbold, C. W., Padilla, C. C., Kidane, A. T., Littmann, S., Daims, H., Pjevac, P., Stewart, F. J., Wagner, M., & Kuypers, M. M. M. (2020). Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean. Nature Communications, 11(1), [767]. https://doi.org/10.1038/s41467-020-14542-3

Sedlacek, C., Giguere, A., Dobie, M. D., Mellbye, B. L., Ferrell, R. V., Wöbken, D., Sayavedra-Soto, L. A., Bottomley, P. J., Daims, H., Wagner, M., & Pjevac, P. (2020). Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth. mSystems, 5(1), [e00562-19]. https://doi.org/10.1128/mSystems.00562-19

Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B., & Berry, D. (2019). A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature Communications, 10(1), [4366]. https://doi.org/10.1038/s41467-019-12413-0