Personalliste Details

Univ.-Prof. Dipl.-Biol. Dr. Holger Daims

T: +43-1-4277-91204

holger.daims@univie.ac.at

http://www.microbial-ecology.net/people/holger-daims

Sommersemester 2022

280230 UE MES-4 UE Individual Research Project (PI)

300347 SE Molecular Phylogeny and Evolution - Advanced Techniques in Molecular Microbiology, Microbial Ecology and Immunology

300366 SE Advances in Molecular Microbial Ecology and Evolution 2

300609 VO Biodiversität und molekulare Ökologie der Mikroorganismen Teil 2

301848 UE Scientific Practice in Molecular Microbiology, Ecology or Immunobiology

570004 WS Imaging Techniques in Microbial Ecology

Wintersemester 2021

280230 UE MES-4 UE Individual Research Project (PI)

300286 UE Fluoreszenz-In-Situ-Hybridisierung (FISH) - Identifizierung nicht-kultivierter Mikroorganismen

300366 SE Advances in Molecular Microbial Ecology and Evolution 1

300487 PS Proseminar Microbial Ecology

301849 UE Scientific Practice in Molecular Microbiology, Ecology or Immunobiology

Jung, M-Y., Sedlacek, C. J., Kits, K. D., Mueller, A. J., Rhee, S-K., Hink, L., Nicol, G. W., Bayer, B., Lehtovirta-Morley, L., Wright, C., de la Torre, J. R., Herbold, C. W., Pjevac, P., Daims, H., & Wagner, M. (2022). Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities. ISME Journal, 16(1), 272-283. https://doi.org/10.1038/s41396-021-01064-z

Liu, S., Jung, M-Y., Zhang, S., Wagner, M., Daims, H., & Wanek, W. (2021). Nitrogen Kinetic Isotope Effects of Nitrification by the Complete Ammonia Oxidizer Nitrospira inopinata. mSphere, 6(6), [e0063421]. https://doi.org/10.1128/mSphere.00634-21

Gottshall, E. Y., Bryson, S. J., Cogert, K. I., Landreau, M., Sedlacek, C. J., Stahl, D. A., Daims, H., & Winkler, M. (2021). Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria. Water Research, 202, [117426]. https://doi.org/10.1016/j.watres.2021.117426

De la Fuente, M. J., De la Iglesia, R., Farias, L., Daims, H., Lukumbuzya, M., & Vargas, I. T. (2021). Electrochemical enrichment of marine denitrifying bacteria to enhance nitrate metabolization in seawater. Journal of Environmental Chemical Engineering, 9(4), [105604]. https://doi.org/10.1016/j.jece.2021.105604

Mueller, A. J., Jung, M-Y., Strachan, C., Herbold, C., Kirkegaard, R. H., Wagner, M., & Daims, H. (2021). Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting. ISME Journal, 15, 732-745. https://doi.org/10.1038/s41396-020-00809-6

Daebeler, A., Kitzinger, K., Koch, H., Herbold, C., Steinfeder, M., Schwarz, J., Zechmeister, T., Karst, S. M., Albertsen, M., Nielsen, P. H., Wagner, M., & Daims, H. (2020). Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira. ISME Journal, 14, 2967-2979. https://doi.org/10.1038/s41396-020-0724-1

Lukumbuzya, M., Kristensen, J. M., Kitzinger, K., Pommerening-Röser, A., Nielsen, P. H., Wagner, M., Daims, H., & Pjevac, P. (2020). A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria. Water Research, 186, [116372]. https://doi.org/10.1016/j.watres.2020.116372

Yang, Y., Daims, H., Liu, Y., Herbold, C. W., Pjevac, P., Lin, J-G., Li, M., & Gu, J-D. (2020). Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems. mBio, 11(2), [e03175-19]. https://doi.org/10.1128/mBio.03175-19

Kitzinger, K., Marchant, H. K., Bristow, L. A., Herbold, C. W., Padilla, C. C., Kidane, A. T., Littmann, S., Daims, H., Pjevac, P., Stewart, F. J., Wagner, M., & Kuypers, M. M. M. (2020). Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean. Nature Communications, 11(1), [767]. https://doi.org/10.1038/s41467-020-14542-3

Sedlacek, C., Giguere, A., Dobie, M. D., Mellbye, B. L., Ferrell, R. V., Wöbken, D., Sayavedra-Soto, L. A., Bottomley, P. J., Daims, H., Wagner, M., & Pjevac, P. (2020). Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth. mSystems, 5(1), [e00562-19]. https://doi.org/10.1128/mSystems.00562-19

Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B., & Berry, D. (2019). A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome. Nature Communications, 10, [4366]. https://doi.org/10.1038/s41467-019-12413-0

Lukumbuzya, M., Schmid, M., Pjevac, P., & Daims, H. (2019). A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms. Frontiers in Microbiology, 10, [1383]. https://doi.org/10.3389/fmicb.2019.01383

Lee, K. S., Palatinszky, M., Cardoso Pereira, M. D. F., Nguyen, J., Fernandez, V., Mueller, A. J., Menolascina, F., Daims, H., Berry, D., Wagner, M., & Stocker, R. (2019). An automated Raman-based platform for the sorting of live cells by functional properties. Nature Microbiology, 4(6), 1035-1048. https://doi.org/10.1038/s41564-019-0394-9

Kits, K., Jung, M-Y., Vierheilig, J., Pjevac, P., Sedlacek, C. J., Liu, S., Herbold, C., Stein, L. Y., Richter, A., Wissel, H., Brueggemann, N., Wagner, M., & Daims, H. (2019). Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata. Nature Communications, 10, [1836]. https://doi.org/10.1038/s41467-019-09790-x

Sorokin, D. Y., Lücker, S., & Daims, H. (2018). Nitrolancea. in Bergey’s Manual of Systematics of Archaea and Bacteria John Wiley & Sons, Inc.. https://doi.org/10.1002/9781118960608.gbm01563

Sakoula, D., Nowka, B., Spieck, E., Daims, H., & Lücker, S. (2018). The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge. Standards in Genomic Sciences, 13, 32. https://doi.org/10.1186/s40793-018-0338-7

Mueller, A. J., Herbold, C., Kirkegaard, R. H., & Daims, H. (2018). Cultivation and Genomic Characterization of Novel Marine Nitrite-oxidizing Bacteria. Postersitzung präsentiert bei ISME17 - 17th Meeting of the International Society for Microbial Ecology, Leipzig, Deutschland.

Wiesinger, J., Romano, S., Eberl, L., Mellbye, B. L., Sayavedra-Soto, L. A., Bottomley, P. J., Uhl, J., Schmitt-Kopplin, P., Daims, H., & Wagner, M. (2018). Quorum sensing in the comammox bacterium Nitrospira inopinata. Postersitzung präsentiert bei ISME17 - 17th Meeting of the International Society for Microbial Ecology, Leipzig, Deutschland.

Kitzinger, K., Koch, H., Lücker, S., Sedlacek, C. J., Herbold, C., Schwarz, J., Daebeler, A., Mueller, A. J., Lukumbuzya, M., Romano, S., Leisch, N., Karst, S. M., Kirkegaard, R., Albertsen, M., Nielsen, P. H., Wagner, M., & Daims, H. (2018). Characterization of the First “Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria. mBio, 9(4), [01186-18]. https://doi.org/10.1128/mBio.01186-18

Daims, H., & Wagner, M. (2018). Nitrospira. Trends in Microbiology, 26(5), 462-463. https://doi.org/10.1016/j.tim.2018.02.001

Nitrification: A Bag Full of Surprises!

Anna Julia Mueller (Vortragende*r) & Holger Daims (Vortragende*r)

8 Okt. 2019

Aktivität: Vorträge › Vortrag › Science to Science

Stickstoff-Eliminierung in der Abwasserreinigung: Überraschungen aus der Mikrobiologie.

Holger Daims (Invited speaker)

4 Sep. 2019

Aktivität: Vorträge › Vortrag › Science to Science

Metabolic versatility, complete ammonia oxidizers, And more: A new perspective on the nitrifying microorganisms.

Holger Daims (Invited speaker)

9 Juli 2019

Aktivität: Vorträge › Vortrag › Science to Science

A new picture of major players in the nitrogen cycle: Genome resolved metagenomics as the key to surprising discoveries.

Holger Daims (Invited speaker)

18 März 2019

Aktivität: Vorträge › Vortrag › Science to Science

Metabolic versatility, complete ammonia oxidizers, and more: A new perspective on the nitrifying microorganisms

Holger Daims (Invited speaker)

5 Nov. 2018

Aktivität: Vorträge › Vortrag › Science to Science

Nitric oxide and nitrous oxide production by complete ammonia oxidizers (comammox)

Holger Daims (Vortragende*r)

19 Sep. 2018 → 21 Sep. 2018

Aktivität: Vorträge › Vortrag › Science to Science

Stickstoffkreisläufe in der Abwasserreinigung – neue und bewährte Wege

Holger Daims (Invited speaker)

27 Feb. 2018

Aktivität: Vorträge › Vortrag › Science to Science

Sleep, stress and the Black Queen: Microbial hidden activities and cooperation

Holger Daims (Invited speaker)

7 Sep. 2017

Aktivität: Vorträge › Vortrag › Science to Science