Ass.-Prof. Dipl.-Inf. Dr. Dominik Kopczynski
T: +43-1-4277-52308
1 - 18 von 18
Fischer, M., Sigle, M., Manke, M.-C., Marzi, J., Schütte, J.-P., Sun, N., Scheuermann, S., Kopczynski, D., Kollotzek, F., Lingens, G. D., Coman, C., Koeppen, M., Nagy, Z., Rohlfing, A.-K., Sickmann, A., Litchfield, D. W., Rebholz, H., Seitz, C., Heinzmann, D., ... Borst, O. (2026). Platelet Casein Kinase 2α is a pivotal player in arterial thrombotic occlusion and post-ischemic myocardial remodeling. Cardiovascular Research. Vorzeitige Online-Publikation. https://doi.org/10.1093/cvr/cvaf269

De Jonckheere, B., Mehic, D., Kopczynski, D., Pirabe, A., Schrottmaier, W., Schmuckenschlager, A., Coman, C., Dreier, T., Haslacher, H., Tolios, A., Ay, C., Pabinger, I., Gebhart, J., Ahrends, R., & Assinger, A. (2026). Altered platelet lipidome in bleeding patients with unexplained platelet function defects. Haematologica, 111(1), 300-313. https://doi.org/10.3324/haematol.2025.287698

Kopczynski, D., Ejsing, C. S., McDonald, J. G., Bamba, T., Baker, E. S., Bertrand-Michel, J., Brügger, B., Coman, C., Ellis, S. R., Garrett, T. J., Griffiths, W. J., Guan, X. L., Han, X., Höring, M., Holčapek, M., Hoffmann, N., Huynh, K., Lehmann, R., Jones, J. W., ... Liebisch, G. (2024). The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data. Journal of Lipid Research, 65(9), Artikel 100621. https://doi.org/10.1016/j.jlr.2024.100621

Witting, M., Malik, A., Leach, A., Bridge, A., Aimo, L., Conroy, M. J., O’Donnell, V. B., Hoffmann, N., Kopczynski, D., Giacomoni, F., Paulhe, N., Gassiot, A. C., Poupin, N., Jourdan, F., & Bertrand-Michel, J. (2024). Challenges and perspectives for naming lipids in the context of lipidomics. Metabolomics, 20(1), Artikel 15. https://doi.org/10.1007/s11306-023-02075-x

Heimerl, S., Höring, M., Kopczynski, D., Sigruener, A., Hart, C., Burkhardt, R., Black, A., Ahrends, R., & Liebisch, G. (2023). Quantification of bulk lipid species in human platelets and their thrombin-induced release. Scientific Reports, 13(1), Artikel 6154. https://doi.org/10.1038/s41598-023-33076-4



de Jonckheere, B., Kollotzek, F., Münzer, P., Göb, V., Fischer, M., Mott, K., Coman, C., Troppmair, N. N., Manke, M. C., Zdanyte, M., Harm, T., Sigle, M., Kopczynski, D., Bileck, A., Gerner, C., Hoffmann, N., Heinzmann, D., Assinger, A., Gawaz, M., ... Ahrends, R. (2023). Critical shifts in lipid metabolism promote megakaryocyte differentiation and proplatelet formation. Nature Cardiovascular Research, 2(9), 835-852. https://doi.org/10.1038/s44161-023-00325-8


Chen, S., Liang, C., Li, H., Yu, W., Prothiwa, M., Kopczynski, D., Loroch, S., Fransen, M., & Verhelst, S. H. L. (2023). Pepstatin-Based Probes for Photoaffinity Labeling of Aspartic Proteases and Application to Target Identification. ACS Chemical Biology, 18(4), 686-692. https://doi.org/10.1021/acschembio.2c00946

Ni, Z., Wolk, M., Jukes, G., Espinosa, K. M., Ahrends, R., Aimo, L., Alvarez-Jarreta, J., Andrews, S., Andrews, R., Bridge, A., Clair, G. C., Conroy, M. J., Fahy, E., Gaud, C., Goracci, L., Hartler, J., Hoffmann, N., Kopczynski, D., Korf, A., ... Fedorova, M. (2023). Guiding the choice of informatics software and tools for lipidomics research applications. Nature Methods, 20(2), 193-204. https://doi.org/10.1038/s41592-022-01710-0

Kopczynski, D., Krause, D., Al Machot, F., Schwudke, D., Hoffmann, N., & Ahrends, R. (2023). The Past and Future of Lipidomics Bioinformatics. in Mass Spectrometry for Lipidomics: Methods and Applications (S. 271-290). Wiley. https://doi.org/10.1002/9783527836512.ch10

McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holcapek, M., Aoki, J., Arita, M., Arita, M., Baker, E. S., Bertrand-Michel, J., Bowden, J. A., Brugger, B., Ellis, S. R., Fedorova, M., Griffiths, W. J., Han, X., Hartler, J., Hoffmann, N., Koelmel, J. P., Kofeler, H. C., ... Ekroos, K. (2022). Introducing the Lipidomics Minimal Reporting Checklist. Nature Metabolism, 4(9), 1086-1088. https://doi.org/10.1038/s42255-022-00628-3

Hoffmann, N., Mayer, G., Has, C., Kopczynski, D., Al Machot, F., Schwudke, D., Ahrends, R., Marcus, K., Eisenacher, M., & Turewicz, M. (2022). A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics. Metabolites, 12(7), Artikel 584. https://doi.org/10.3390/metabo12070584


Kopczynski, D., Hentschel, A., Coman, C., Schebb, N. H., Hornemann, T., Mashek, D. G., Hartung, N. M., Shevchuk, O., Schott, H.-F., Lorenz, K., Torta, F., Burla, B., Zahedi, R. P., Sickmann, A., Kreutz, M. R., Ejsing, C. S., Medenbach, J., & Ahrends, R. (2020). Simple Targeted Assays for Metabolic Pathways and Signaling: A Powerful Tool for Targeted Proteomics. Analytical Chemistry, 92(20), 13672-13676. https://doi.org/10.1021/acs.analchem.0c02793


Peng, B., Kopczynski, D., Pratt, B. S., Ejsing, C. S., Burla, B., Hermansson, M., Benke, P. I., Tan, S. H., Chan, M. Y., Torta, F., Schwudke, D., Meckelmann, S. W., Coman, C., Schmitz, O. J., MacLean, B., Manke, M.-C., Borst, O., Wenk, M. R., Hoffmann, N., & Ahrends, R. (2020). LipidCreator workbench to probe the lipidomic landscape. Nature Communications, 11(1), Artikel 2057. https://doi.org/10.1038/s41467-020-15960-z

1 - 18 von 18

Seemless Integration and In-Depth Analysis of Lipidomics Data enabled by Computational Lipidomics

Kopczynski, D. (Invited speaker)

24 März 2026

Aktivität: VorträgeVortragScience to Science


Extending Gene Ontology (GO) Term Analyses for Lipidomic-Centered Multi-Omics Applications

Kopczynski, D. (Invited speaker), Coman, C. (Autor*in), Hoffmann, N. (Autor*in) & Ahrends, R. (Autor*in)

15 März 2026

Aktivität: VorträgeVortragScience to Science


Extending Gene Ontology (GO) Term Analyses for Lipidomic-Centered Multi-Omics Applications

Kopczynski, D. (Invited speaker), Coman, C. (Autor*in), Hoffmann, N. (Autor*in) & Ahrends, R. (Autor*in)

23 Feb. 2026

Aktivität: VorträgeVortragScience to Science


Targeted Lipidomics with LipidCreator and Skyline

Kopczynski, D. (Vortragende*r) & Hoffmann, N. (Autor*in)

23 Feb. 2026

Aktivität: VorträgeVortragScience to Science


Improving Lipid Identification and Quantification: Chromatogram Deconvolution for LC-MS/MS Workflows

Niedermaier, F. (Vortragende*r), Wolrab, D. (Autor*in), Ahrends, R. (Autor*in) & Kopczynski, D. (Autor*in)

18 Feb. 2026

Aktivität: VorträgeVortragScience to Science


Lipidomics-LIFS Bioinformatics Training

Kopczynski, D. (Vortragende*r) & Ahrends, R. (Autor*in)

18 Feb. 2026

Aktivität: VorträgeVortragScience to Science


Status and Perspectives of the Lipidomics Reporting Checklist

Kopczynski, D. (Invited speaker) & Ahrends, R. (Autor*in)

24 Feb. 2025

Aktivität: VorträgeVortragScience to Science


Status and Perspectives of the Lipidomics Reporting Checklist

Kopczynski, D. (Vortragende*r) & Ahrends, R. (Autor*in)

1 Sept. 2024

Aktivität: VorträgeVortragScience to Science


Status and Perspectives of the Lipidomics Reporting Checklist

Kopczynski, D. (Vortragende*r) & Ahrends, R. (Autor*in)

5 Mai 2024

Aktivität: VorträgeVortragScience to Science


LORA: Lipid Over-Representation Analysis based on structural information

Vondrackova, M. (Vortragende*r), Kopczynski, D. (Autor*in), Hoffmann, N. (Autor*in) & Ondře, K. (Autor*in)

27 Aug. 2023

Aktivität: VorträgeVortragScience to Science


Beyond good lipidomics practice

Ahrends, R. (Invited speaker), Kopczynski, D. (Autor*in) & Liebisch, G. (Autor*in)

8 Apr. 2022

Aktivität: VorträgeVortragScience to Science


LipidCreator workbench to probe the lipidomics landscape

Peng, B. (Autor*in), Kopczynski, D. (Vortragende*r), Coman, C. (Autor*in), Hoffmann, N. (Autor*in) & Ahrends, R. (Autor*in)

7 Okt. 2021

Aktivität: VorträgeVortragScience to Science


Institut für Analytische Chemie

Sensengasse 8
1090 Wien
Zimmer: 2012

T: +43-1-4277-52308

dominik.kopczynski@univie.ac.at